BUG FIX: Fixed the "Modification not found" error that occurred if opening two projects in a row without closing the tool.
It should be possible to run PeptideShaker on almost any computer where Java 1.6 or newer is installed. We recommend always using the latest version of Java, 1.7 or newer is recommend.
1) Install MPICH2 from here (select unofficial binary package for windows)
Click the Erase tab and make sure Mac OS Extended (Journaled) is selected in the format tab.
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Unidentified Developer - If you run PeptideShaker on a Mac you can get the warning “PeptideShaker” can’t be opened because it is from an unidentified developer. To escape this warning control-click on the file icon and then select “Open.” This will give you the option of opening it regardless of its unidentified source. This only has to be done once for each PeptideShaker version.
lutefisk
NEW FEATURE: Made it possible to include more than one protein HTML link in the same cell in the tables.
builds SRM/MRM methods and analyzes resulting data
BUG FIX: In the New Project dialog loading a project without changing the search settings resulted in a missing FASTA file.
FEATURE IMPROVEMENT: Cleaned up the error given if a protein cannot be found in the FASTA file.
To start identifying peptides and proteins using SearchGUI, download the latest version, unzip the downloaded file, and double-click on the file.
LIBRARY UPDATE: Updated utilities to version 3.13.56.
Chrombox Q
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